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Preprocess SingleCellExperiments and Spatial Experiments

Usage

preprocess(object, min_umi = 500, max_umi = NULL, assay = "counts")

Arguments

object

SingleCellExperiment or SpatialExperiment, if AnnData or Seurat it will be converted

min_umi

minimum umi count for spots/cells

max_umi

maximimum umi

assay

assay to use for calculation, you can use any assay but counts is recommended