Heatmaps cell pair localization and correlation of scores — localization_heatmap • spacedeconv

Generates a heatmap of cell pair localization p-values and a correlation heatmap of scores between all celltypes found after deconvolution

Usage

localization_heatmap(
  spe,
  method,
  distance = 0,
  correlation = TRUE,
  localization = TRUE,
  matrix = FALSE
)

Arguments

spe: SpatialExperiment object
method: deconvolution method
distance: size area of interest
correlation: correlation heatmap based on scores
localization: colocalization and avoidance heatmap
matrix: matrix (TRUE/FALSE)

Value

cell pair localization heatmap and correlation heatmap