Calculate Colocalization — cell_pair_localization • spacedeconv

Calculate Colocalization

Usage

cell_pair_localization(
  spe,
  method = NULL,
  distance = 0,
  cell_type_1 = NULL,
  cell_type_2 = NULL,
  density = FALSE,
  niter = 100,
  presence = NULL
)

Arguments

spe: SpatialExperiment
method: presence method
distance: distance in spot diameter
cell_type_1: celltype 1
cell_type_2: celltype 2
density: logical
niter: permutations
presence: presence matrix if available

Value

statistics and graph